OncologyDr. Shrinidhi NathanyCancer Genomics

Consultant, Molecular Haematology & Oncology, Fortis Memorial Research Institute, Gurugram

Part 2 of 9 in Genomics Revolution in Cancer

Germline Versus Somatic Testing: The Two Pillars of Genomic Testing

January 19, 2025

Two Different Questions, Two Different Tests

Somatic testing examines the tumour itself: DNA is extracted directly from the biopsy to identify the mutations driving that specific cancer and to work out which targeted medicines are likely to help. Germline testing looks instead at inherited genetic material present in every cell of the body from birth, to determine whether a person, and their family, carries a hereditary risk of disease.

Germline Testing Across a Lifetime

Germline testing can be carried out at almost any stage of life. During pregnancy, a mother's blood can be tested for fetal DNA to check whether the pregnancy itself carries a genetic abnormality. In childhood, adolescence and adulthood, the same category of testing can flag inherited predispositions to disease, including cancer, well before any symptoms appear. In a patient who already has cancer, germline testing alongside the tumour's own somatic testing serves several purposes at once: confirming the diagnosis, stratifying risk, identifying which relatives should also be tested, and helping determine which medicine is most likely to work for that particular patient.

Why the Distinction Matters in Practice

Confusing the two is a common source of error. A somatic panel run on a tumour tells a clinician what to target in that specific cancer but nothing about hereditary risk to that patient's children or siblings, while germline testing alone says nothing about which drug is likely to work against a tumour that already exists. Which test to order, or whether both are needed, depends on the clinical question being asked.

This guide is based on a live Jivo Masterclass: Dr. Shrinidhi Nathany taught doctors across Africa on January 19, 2025.

FROM THE LIVE Q&A

MO

Moderator

Can liquid biopsy also be done for other purposes, not just lung cancer screening?

SN

Dr. Shrinidhi Nathany

Yes.

See all 18 questions from this masterclass →

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Frequently Asked Questions

What has caused the rise in cancer in the world today?

What has caused the rise in cancer is multifactorial. Number one is lifestyle. Number two is environmental insults like radiation and the kind of food we eat, and stress. But also underrated and underdiagnosed is genetics, and at least 30% of cancers are genetic, so we need to test to understand those cases.

Can you clarify what CRISPR-Cas9 is?

CRISPR-Cas9 is a technology related to gene therapy that lets you edit the gene. CRISPR is gene editing, and the Cas9 technology is what lets us edit the gene, for example the gene causing type 1 diabetes mellitus, and deliver it back to the patient so the disease is cured. That is not yet available in all countries.

What is the most common genetic cancer?

The most common genetic cancer, as it's the most commonly tested for, is breast cancer. Breast and ovarian cancer has a syndrome called hereditary breast and ovarian cancer syndrome, and that is the most common because it is right now the most tested for. However, there are many more cancers which can be inherited.

Can molecular genomics help in preventing aging?

That is the most in-thing right now, which is longevity testing, which can tell you your actual biological age. Supposing you are 30 years of age by your date of birth, but because of stress your body may actually be 40 years old biologically. You can prevent that: we can first study why your body is aging faster, and then you can modify your lifestyle based on the genetics, what you should eat and what you should not eat and what kind of therapy you should take, and it gives you a lot of a personalised report.

Can you clarify more about gene therapy?

For example, sickle cell anaemia is caused by a point mutation where only one letter in the genome is changing. So what we can do is if A is becoming B, we make the B back to A and edit that gene, and deliver it through an IV cannula in the form of a solution. That is what is going to get integrated into the patient, and the disease can be cured. That is what gene therapy is.

What is the difference between somatic and germline genetic testing?

Somatic testing sequences DNA taken directly from the tumour to find the mutations driving that specific cancer. Germline testing looks at inherited genetic material present in every cell from birth, to assess hereditary risk to the patient and their family.

Can germline genetic testing be done during pregnancy?

Yes. A mother's blood can be tested for fetal DNA to check whether the pregnancy carries a genetic abnormality.

Why might a cancer patient need both somatic and germline testing?

Somatic testing identifies which targeted medicine is likely to work against the existing tumour, while germline testing establishes whether the patient's relatives also carry a hereditary risk that should be tested for separately.

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