OncologyDr. Shrinidhi NathanyCancer Genomics

Consultant, Molecular Haematology & Oncology, Fortis Memorial Research Institute, Gurugram

Series overview · 9 articles

Genomics Revolution in Cancer

January 19, 2025

Cancer used to be classified almost entirely by what a pathologist could see under a microscope. Dr. Shrinidhi Nathany, Consultant in Molecular Haematology and Oncology at Fortis Memorial Research Institute, Gurugram, opened a Jivo Healthcare masterclass for doctors across Africa by explaining how that has changed: the World Health Organization now classifies every tumour in the body by its underlying genomics, not just its appearance on a biopsy slide. Trained first in pathology before moving into molecular diagnostics, she walked through what genomic testing means in practice, for diagnosis, treatment selection and hereditary risk in cancer care. This guide draws on that session.

Why Genomics Now Decides How a Tumour Is Classified

Genetics is the study of individual genes and the disorders a single faulty gene can cause, visible somewhere in the patient's body. Genomics studies the alterations across the full set of genes, in the laboratory rather than at the bedside. Every person carries around 30,000 genes and is 99.9 percent identical to any other person; the 0.1 percent difference is what makes each person unique, and only about 1.5 percent of the genome codes for protein at all, which is the portion most cancer testing actually examines. Once a suspicious piece of tissue is removed by biopsy, its DNA is put through genome sequencing, also called next generation sequencing, to identify the alterations driving that specific cancer. Without a molecular report, a tumour can only be labelled 'not otherwise specified,' a designation that changes the treatment a patient receives. Every cancer must now undergo at least basic genomic sequencing to reach a firm diagnosis, a standard set by the National Comprehensive Cancer Network and endorsed by the European Society for Medical Oncology.

What the Rest of This Series Covers

The articles that follow this guide go deeper into germline versus somatic testing, how genomic sequencing changed precision treatment for stage 4 lung cancer, hereditary cancer risk and the case for family testing, pharmacogenomics and drug response, liquid biopsy for cancer screening, how next generation sequencing actually works in the lab, gene therapy and genome editing, and where genomics is used beyond cancer, including pre-marital screening and the barriers that still limit wider access.

This guide is based on a live Jivo Masterclass: Dr. Shrinidhi Nathany taught doctors across Africa on January 19, 2025.

FROM THE LIVE Q&A

MO

Moderator

Can you clarify what you meant about liquid biopsy screening still being under research, and whether that applies to lung cancer too?

SN

Dr. Shrinidhi Nathany

The cancer screening approach using liquid biopsy, which uses circulating tumour DNA in blood to catch early-stage disease, is still under research overall. In some cancers like lung cancer it has already been mandated and recommended by guidelines, but in other cancers it is still under research. For lung cancer specifically it is already recommended and proven; for other cancers it is still under research. And for any kind of inherited genetic disease, we can test the family and detect the genetic disease in other family members early.

See all 18 questions from this masterclass →

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Frequently Asked Questions

Can liquid biopsy also be done for other purposes, not just lung cancer screening?

Yes.

What has caused the rise in cancer in the world today?

What has caused the rise in cancer is multifactorial. Number one is lifestyle. Number two is environmental insults like radiation and the kind of food we eat, and stress. But also underrated and underdiagnosed is genetics, and at least 30% of cancers are genetic, so we need to test to understand those cases.

Can you clarify what CRISPR-Cas9 is?

CRISPR-Cas9 is a technology related to gene therapy that lets you edit the gene. CRISPR is gene editing, and the Cas9 technology is what lets us edit the gene, for example the gene causing type 1 diabetes mellitus, and deliver it back to the patient so the disease is cured. That is not yet available in all countries.

What is the most common genetic cancer?

The most common genetic cancer, as it's the most commonly tested for, is breast cancer. Breast and ovarian cancer has a syndrome called hereditary breast and ovarian cancer syndrome, and that is the most common because it is right now the most tested for. However, there are many more cancers which can be inherited.

Can molecular genomics help in preventing aging?

That is the most in-thing right now, which is longevity testing, which can tell you your actual biological age. Supposing you are 30 years of age by your date of birth, but because of stress your body may actually be 40 years old biologically. You can prevent that: we can first study why your body is aging faster, and then you can modify your lifestyle based on the genetics, what you should eat and what you should not eat and what kind of therapy you should take, and it gives you a lot of a personalised report.

What is the difference between genetics and genomics?

Genetics is the study of individual genes and the disorders a single faulty gene can cause, visible in the patient. Genomics studies the alterations across the full set of genes together, in the laboratory.

Why does a cancer diagnosis now require genomic sequencing?

The World Health Organization now classifies every tumour in the body by its underlying genomics rather than only its appearance on a biopsy slide, and without a molecular report a tumour can only be labelled 'not otherwise specified,' which changes the treatment a patient receives.

How much of the human genome actually codes for protein?

Only about 1.5 percent, and that is the portion most cancer genomic testing examines.

Which guidelines require genomic sequencing for cancer diagnosis?

National Comprehensive Cancer Network guidelines require it, and the European Society for Medical Oncology also mandates at least basic genomic sequencing before treatment.

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